alphafill-create-index¶
Synopsis¶
alphafill-create-index [options]
Description¶
alphafill-create-index is the program that creates a new FastA file for the sequences found in the PDB or PDB-REDO files.
- --help¶
Display the options allowed for this program.
- --version¶
Display the version of this program.
- --verbose¶
Use a more verbose output, printing status and progress information.
- --quiet¶
Do not print any status or progress information.
- --config=configfile¶
Use the file configfile to collection options. The default is to look for a file called alphafill.conf in the current directory and then in the directory /etc. Use this option to override this and specify your own configuration file.
- --pdb-dir=dirname¶
Directory containing the mmCIF files for the PDB
- --pdb-fasta=filename¶
The FastA file containing the PDB sequences
- --threads=nr-of-threads, -t nr-of-threads¶
Number of threads to use, zero means all available cores.
Default is to use as many cores as the system has.
See also¶
alphafill-process, alphafill-rebuild-db, alphafill-server, alphafill.conf